PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_58760.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 81aa    MW: 9265.57 Da    PI: 7.6831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_58760.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-143741794
                             E--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3 17 vlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                             ++p  f ++h   +   + + +++l++  s  +Wevk+  ++++    lt+GW++F+  +  ++gD+v+F++dg+  f  +v
  Rsa1.0_58760.1_g00001.1  3 SIPIAFYSKHitnE--DNVNAMVKLRSdASDLTWEVKM--DGRR----LTQGWQKFATKHAFQVGDIVIFRHDGDLLF--HV 74
                             79********9742..334568999886888*******..9998....***********************8875433..44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.2E-7180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-16280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-15380IPR015300DNA-binding pseudobarrel domain
PfamPF023628.9E-10369IPR003340B3 DNA binding domain
CDDcd100173.48E-11377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MQSIPIAFYS KHITNEDNVN AMVKLRSDAS DLTWEVKMDG RRLTQGWQKF ATKHAFQVGD  60
IVIFRHDGDL LFHVTPFGPS C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894312e-56AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135996.16e-42PREDICTED: B3 domain-containing protein REM7-like
SwissprotQ84WP33e-29REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078JJX03e-42A0A078JJX0_BRANA; BnaC03g73290D protein
STRINGBra029892.1-P7e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-30B3 family protein